The brokerConnect.conf, clientConnect.conf, serverConnect.conf, runcmd_env.sh, and imk.dat files do not get copied between locations as part of the periodic (automatic) backup or the manual backup that uses the ic-failover-server script. These special files are generated as part of the installation process and should not be copied between Active and Standby hosts.
If any maintenance or modifications are needed for these files, you need manually modify each file on the Active and Standby hosts.