You need to change the value of the flags to FALSE which is TRUE by default.
When the value of the flag DisableIPStoragePathDiscovery is FALSE:
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It enables an IPStoragePath discovery in the IP topology.
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An IPStoragePath is a physical path from a file server (FileServer) to an ESX host.
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An IPStoragePath contains all the physical nodes and connections which form the IPStoragePath.
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The default value is TRUE.
When the value of the flag DisableJAVAProbe is FALSE:
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It needs to restart the server.
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The default value is TRUE. So, by default, the JAVA probe is disabled.