For managed virtual disk on vSphere, snapshots are used primarily for saving system state and for backup, while linked clones create duplicate images for provisioning of View desktops. A snapshot is usually a single redo log in a parent-child chain, while linked clones are usually multiple redo logs based on the same parent.
In the vSphere 5.5 release and later, handling of linked clone hierarchies was changed to improve the efficiency of backup and restore. The disk object now contain a “disk backing” that contains one or more parent backing objects until the base disk is reached. This allows access anywhere in the parent-child disk chain. With a clean never-used base virtual machine, the linked clone hierarchy or snapshot chain always has the proper number of parent backing objects for the nodes in the chain.
VDDK does not contain any convenience interfaces for backing up and restoring the linked clone hierarchy (or the snapshot chain). Backup applications are responsible for discovering and saving the hierarchy if they want to support this as a feature. Linked clones cannot be restored using SAN transport.
In VMware View (VDI) environments, linked clone backup might not be necessary or advisable, especially for nonpersistent desktops that revert to default after use.
When the base disk or a child disk has an extra snapshot, when redo logs used to create linked clones were never deleted, or when any parent or child in the chain needs disk consolidation or is in a bad snapshot state, it is possible to have extra (too many) parent backing objects. Consequently, restore applications should never assume the correct number of parent backing objects. They must recursively query until the base parent backing object is reached, and make sure when restoring leaf nodes that the correct parent backing object matches the node being restored.